Resources

There are many resources online and in print. This is by no means a comprehensive list, but hopefully a launching pad for some very useful website and books. All of these examples provide code in same shape or form.

Datasets

This is a list of most of the data sources used in this course.

From The Portal Project Teaching Database
- Portal_rodents_19772002_scinameUUIDs.csv [raw trapping data]
- species.csv [species id metadata]
- surveys.csv [trapping data by record id]
- surveys_complete.csv [cleaned trapping data by record id]
- combined.csv [trapping data merged with record id metadata]
- plots.csv [plot type metadata]
From Data Carpentry: Genomics Lesson
- sequencing_results_metadata.txt [metadata from DNA sequencing]
From Data Carpentry: R for Data Analysis and Visualization of Ecological Data
- survey_data_spreadsheet_messy.xls [example of untidy data]
From Software Carpentry: R for Reproducible Scientific Analysis
- continents.RDA [gapminder continent-level data]
- wide_eg.csv [blood albumin levels]
- stocks.tsv [restaurant stock data]
- gapminder.csv [country characteristics by year]
From ANGUS: Analyzing High Throughput Sequencing Data
- rnaseq.zip [zipped folder of RNA sequence data]
From Data wRangling for Ecologists
- 2001_mauna_loa_met_data.zip [raw meteorological station data from Mauna Loa]
- 2001 Mauna Loa meteorological station data [tidy format of minute-scale meteorological data from Mauna Loa Observatory]
- solinst temp/stage logger data (full) [pressure transducer data logger data from NF American River]
- solinst A [partial pressure transducer data logger data from NF American River]
- solinst B [partial pressure transducer data logger data from NF American River]
- solinst 2015

Resources

Datasets

Presentations

Bonus Tutorials